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Jobs, Code, Videos and News for Go hackers - everything about the go programming languageTue, 02 Jan 2018 11:45:00 +0000Equation-centric dataflow programming in GoAn experiment in expressing dataflow programs in an equation-like style in Go 7 points posted by saml
http://bionics.it/posts/equation-centric-dataflow-programming-in-go
3049Wed, 27 Dec 2017 13:12:00 +0000First production workflow run with SciPipe - a Go-based scientific workflow toolBlog post with some notes after running the first real-world workflow job with <a href="http://scipipe.org">SciPipe</a>, a Go-based scientific workflow tool we have been developing over the last couple of years. 7 points posted by saml
http://bionics.it/posts/first-production-workflow-run-with-scipipe
2713Thu, 28 Sep 2017 19:10:00 +0000Preprint on SciPipe - Go-based scientific workflow library #pipelines #workflows #bioinformaticsWe just published a preprint* about our Go-based scientific workflow library <a href="http://scipipe.org">SciPipe</a> (<a href="https://github.com/scipipe/scipipe">GitHub repo</a>), on bioRxiv (<a href="https://www.biorxiv.org/content/early/2018/08/01/380808">direct link to preprint</a>).<div><div><div><br></div><div>The link above is to a short blog post framing the background for the development of SciPipe, in brief terms, including our frustration with the python-based Luigi/SciLuigi workflow system.</div><div><br></div><div>Feedback on the preprint, is very much welcome, as soon as possible, as we will soon submit to a journal.</div><div><br>* (non peer-reviewed raw manuscript copy uploaded for early feedback before submitting to a journal)</div></div></div> 4 points posted by saml
http://bionics.it/posts/scipipe-preprint
3476Sat, 04 Aug 2018 12:39:00 +0000Parsing drugbank xml or any large xml file in streaming mode in go 3 points posted by gopher
https://bionics.it/posts/parsing-drugbank-xml-or-any-large-xml-file-in-streaming-mode-in-go
3960Tue, 07 May 2019 18:01:00 +0000Parsing DrugBank XML (or any large XML file) in streaming mode in Go #datascienceBlog post exploring how large, tricky XML files can be parsed very efficiently using Go's awesome struct unmarshalling feature, without the need to read everything into memory from the start. Includes a full reproducible code workflow code example implemented with the <a href="http://scipipe.org">SciPipe</a> workflow library. 3 points posted by saml
http://bionics.it/posts/parsing-drugbank-xml-or-any-large-xml-file-in-streaming-mode-in-go
3237Fri, 16 Mar 2018 20:57:00 +0000Show: (Almost) range over multiple go channels simultaneouslyA post discussing ways to get closer to something like ranging over multiple Go channels simultaneously. Feedback and further ideas warmly welcomed. 3 points posted by saml
http://bionics.it/posts/range-over-multiple-go-channels
2749Thu, 05 Oct 2017 09:07:00 +0000